new shell scripts for generating options pathnames and cases

gen_cases.sh

+#!/bin/bash
+# Ignacio Pisso 2018-03-29
+
+default_gen_options=gen_options_default.sh
+gen_options=${1:-$default_gen_options} # $1
+
+
+echo gen_options=$gen_options
+
+#execute gen options
+./$gen_options
+
+
+options_list="$(ls -d options*)"
+
+# generate pathnames
+
+# generate outputs
+
+for i in ${options_list}
+do
+echo $i
+done
+
+./gen_pathnames.sh
+
+
+# list available suffixes
+
+
+

gen_cases_default.sh

+pathnames_local=~/repos/flexpart/pathnames
+
+# mkdir output
+# cp $pathnames_local pathnames
+
+gen_pathnames_default.sh
+

gen_options_default.sh

+#!/bin/bash
+# Ignacio Pisso 2018-03-29
+
+options_repo=~/repos/flexpart/options
+
+cp -r  $options_repo options
+
+

gen_options_group1_gridout.sh

+#!/bin/bash
+# Ignacio Pisso 2018-03-29
+# generate FLEXPART variations on the default for parameter sweep hello world tests
+
+options_template=~/repos/flexpart/options
+
+# group 1 gridded output
+#
+
+suffix=_1
+options_new=options$suffix
+cp -r  $options_template $options_new
+sed -i '/IOUT=/c\ IOUT=1,' $options_new/COMMAND
+
+
+suffix=_2
+options_new=options$suffix
+cp -r  $options_template $options_new
+sed -i '/IOUT=/c\ IOUT=2,' $options_new/COMMAND
+
+suffix=_3
+options_new=options$suffix
+cp -r  $options_template $options_new
+sed -i '/IOUT=/c\ IOUT=3,' $options_new/COMMAND
+
+suffix=_4
+options_new=options$suffix
+cp -r  $options_template $options_new
+sed -i '/IOUT=/c\ IOUT=4,' $options_new/COMMAND
+
+suffix=_5
+options_new=options$suffix
+cp -r  $options_template $options_new
+sed -i '/IOUT=/c\ IOUT=5,' $options_new/COMMAND
+
+
+
+
+
+
+
+

gen_options_group2.sh

+#!/bin/bash
+# Ignacio Pisso 2018-03-29
+# generate FLEXPART variations on the default for parameter sweep hello world tests
+
+options_template=~/repos/flexpart/options
+
+# group 1 gridded output
+#
+suffix=_bwd
+options_new=options$suffix
+cp -r  $options_template  $options_new
+sed -i '/LDIRECT=/c\ LDIRECT=    -1,' $options_new/COMMAND
+sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE=    1,' $options_new/COMMAND
+sed -i '/IOUT=/c\ IOUT=    1,' $options_new/COMMAND #should not be needed
+
+suffix=_bwd5
+options_new=options$suffix
+cp -r  $options_template  $options_new
+sed -i '/LDIRECT=/c\ LDIRECT=    -1,' $options_new/COMMAND
+sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE=    1,' $options_new/COMMAND
+sed -i '/IOUT=/c\ IOUT=    5,' $options_new/COMMAND
+
+suffix=_bwd_nc
+options_new=options$suffix
+cp -r   $options_template  $options_new
+sed -i '/LDIRECT=/c\ LDIRECT=    -1,' $options_new/COMMAND
+sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE=    1,' $options_new/COMMAND
+sed -i '/IOUT=/c\ IOUT=    9,' $options_new/COMMAND
+
+
+
+
+
+
+

gen_pathnames.sh

+#!/bin/bash
+
+pathnames_template=~/repos/flexpart/pathnames
+
+
+defaultdir=/Users/Shared/Jenkins/Home/jobs/FLEXPART-dev-tests-run2/workspace/
+defaultdir=
+#echo $defaultdir
+
+OUTPUT="$(ls -d1 ${1:-$defaultdir}options*)"
+#OUTPUT="$(ls -d1 ${1:-$defaultdir}options_*)"
+#OUTPUT="$(find ${1:-$defaultdir}options_*)"
+OUTPUTpwd="$(pwd)"
+
+echo OUTPUT=$OUTPUT
+
+
+
+#mkdir output
+#cp $pathnames_local pathnames
+
+for i in ${OUTPUT}
+do
+
+echo $i
+  echo expand:
+  suffix=${i#*options}
+  echo suffix=$suffix
+
+options_new=$i
+
+output_new=output$suffix
+mkdir $output_new
+
+pathnames_new=pathnames$suffix
+
+echo pathnames_new = $pathnames_new
+echo pathnames_template = $pathnames_template 
+
+# copy template (contains valid AVAILABLE file and winds)
+cp $pathnames_template $pathnames_new
+# replace options line
+sed -i "s/\boptions\b/$options_new/g" $pathnames_new
+# replace output line
+sed -i "s/\boutput\b/$output_new/g" $pathnames_new
+
+done
+

gen_pathnames_default.sh

+pathnames_local=~/repos/flexpart/pathnames
+
+mkdir output
+cp $pathnames_local pathnames
+
+

gen_runs.sh

+#!/bin/bash
+
+#FLEXPART=FLEXPART_8d70e43
+
+# run generate cases
+./gen_cases.sh $1
+
+./loop_on_pathnames_laptop.sh
+
+
+

loop_on_pathnames_laptop_full.sh

+#!/bin/bash
+
+OUTPUTdefault="$(ls -1 pathnames*)"
+
+OUTPUT=${OUTPUTvar:-$OUTPUTdefault}
+
+OUTPUTpwd="$(pwd)"
+
+FLEXPARTdefault=FLEXPART_8d70e43
+FLEXPART=${FLEXPARTvar:-$FLEXPARTdefault}
+
+echo $OUTPUT
+
+for i in ${OUTPUT}
+do
+
+#FP_slurm_batch_sl=slurm_batch_$i.sl
+#FP_slurm_batch_sl=batch_dry_$i.sl
+FP_slurm_batch_sl=clrun_full_$i.sl
+
+        echo  '                                          ' >> $FP_slurm_batch_sl
+        #FLEXPART_run_string="$FLEXPART  $i -i"
+        FLEXPART_run_string="$FLEXPART  $i"
+        echo $FLEXPART_run_string   >> $FP_slurm_batch_sl
+	echo $FLEXPART_run_string
+done
+