Update workflow runner

Manifest.toml

@@ -72,6 +72,16 @@ git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8"
 uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
 version = "0.8.6"
 
+[[deps.ColorTypes]]
+deps = ["FixedPointNumbers", "Random"]
+git-tree-sha1 = "c7acce7a7e1078a20a285211dd73cd3941a871d6"
+uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
+version = "0.12.0"
+weakdeps = ["StyledStrings"]
+
+    [deps.ColorTypes.extensions]
+    StyledStringsExt = "StyledStrings"
+
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
 git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
@@ -97,17 +107,13 @@ version = "2.4.2"
 git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
 version = "1.5.8"
+weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"]
 
     [deps.ConstructionBase.extensions]
     ConstructionBaseIntervalSetsExt = "IntervalSets"
     ConstructionBaseLinearAlgebraExt = "LinearAlgebra"
     ConstructionBaseStaticArraysExt = "StaticArrays"
 
-    [deps.ConstructionBase.weakdeps]
-    IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
-    LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-    StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
-
 [[deps.Crayons]]
 git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@@ -184,6 +190,12 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
+[[deps.EarCut_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053"
+uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5"
+version = "2.2.4+0"
+
 [[deps.ExceptionUnwrapping]]
 deps = ["Test"]
 git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a"
@@ -192,9 +204,9 @@ version = "0.1.11"
 
 [[deps.Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "cc5231d52eb1771251fbd37171dbc408bcc8a1b6"
+git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
-version = "2.6.4+0"
+version = "2.6.4+1"
 
 [[deps.Extents]]
 git-tree-sha1 = "81023caa0021a41712685887db1fc03db26f41f5"
@@ -234,6 +246,12 @@ weakdeps = ["Mmap", "Test"]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 version = "1.11.0"
 
+[[deps.FixedPointNumbers]]
+deps = ["Statistics"]
+git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172"
+uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
+version = "0.8.5"
+
 [[deps.Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
@@ -256,12 +274,24 @@ git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88"
 uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
 version = "1.3.8"
 
+[[deps.GeoInterfaceMakie]]
+deps = ["GeoInterface", "GeometryBasics", "MakieCore"]
+git-tree-sha1 = "3f87fd8414194dd25ea5d0371c3950985e3c8d86"
+uuid = "0edc0954-3250-4c18-859d-ec71c1660c08"
+version = "0.1.8"
+
 [[deps.GeoInterfaceRecipes]]
 deps = ["GeoInterface", "RecipesBase"]
 git-tree-sha1 = "fb1156076f24f1dfee45b3feadb31d05730a49ac"
 uuid = "0329782f-3d07-4b52-b9f6-d3137cf03c7a"
 version = "1.0.2"
 
+[[deps.GeometryBasics]]
+deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
+git-tree-sha1 = "b62f2b2d76cee0d61a2ef2b3118cd2a3215d3134"
+uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
+version = "0.4.11"
+
 [[deps.Git]]
 deps = ["Git_jll"]
 git-tree-sha1 = "04eff47b1354d702c3a85e8ab23d539bb7d5957e"
@@ -304,6 +334,17 @@ deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 version = "1.11.0"
 
+[[deps.IntervalSets]]
+git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0"
+uuid = "8197267c-284f-5f27-9208-e0e47529a953"
+version = "0.7.10"
+weakdeps = ["Random", "RecipesBase", "Statistics"]
+
+    [deps.IntervalSets.extensions]
+    IntervalSetsRandomExt = "Random"
+    IntervalSetsRecipesBaseExt = "RecipesBase"
+    IntervalSetsStatisticsExt = "Statistics"
+
 [[deps.InvertedIndices]]
 git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
 uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
@@ -314,6 +355,11 @@ git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
 version = "0.2.2"
 
+[[deps.IterTools]]
+git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023"
+uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
+version = "1.10.0"
+
 [[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
@@ -370,10 +416,16 @@ uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
 version = "8.6.0+0"
 
 [[deps.LibGEOS]]
-deps = ["CEnum", "Extents", "GEOS_jll", "GeoInterface", "GeoInterfaceRecipes"]
-git-tree-sha1 = "fd9bcf038a9c4116ee62411014927ed462fc5b0c"
+deps = ["CEnum", "Extents", "GEOS_jll", "GeoInterface", "GeoInterfaceMakie", "GeoInterfaceRecipes"]
+git-tree-sha1 = "7e13a222215c460247278b1d5883f370559cca07"
 uuid = "a90b1aa1-3769-5649-ba7e-abc5a9d163eb"
-version = "0.8.6"
+version = "0.9.2"
+
+    [deps.LibGEOS.extensions]
+    LibGEOSMakieExt = "Makie"
+
+    [deps.LibGEOS.weakdeps]
+    Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 
 [[deps.LibGit2]]
 deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
@@ -443,6 +495,12 @@ git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846"
 uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
 version = "1.10.0+1"
 
+[[deps.MakieCore]]
+deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
+git-tree-sha1 = "b774d0563bc332f64d136d50d0420a195d9bdcc6"
+uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
+version = "0.8.11"
+
 [[deps.MappedArrays]]
 git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e"
 uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
@@ -500,6 +558,11 @@ version = "1.4.7"
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
+[[deps.Observables]]
+git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225"
+uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
+version = "0.5.5"
+
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
@@ -651,9 +714,9 @@ version = "1.6.1"
 
 [[deps.SQLite_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "004fffbe2711abdc7263a980bbb1af9620781dd9"
+git-tree-sha1 = "e84fab7d16107342d7638fbd519151d9a0d80720"
 uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8"
-version = "3.45.3+0"
+version = "3.47.2+0"
 
 [[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
@@ -698,6 +761,25 @@ version = "2.4.0"
     [deps.SpecialFunctions.weakdeps]
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
 
+[[deps.StaticArrays]]
+deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
+git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f"
+uuid = "90137ffa-7385-5640-81b9-e52037218182"
+version = "1.9.8"
+
+    [deps.StaticArrays.extensions]
+    StaticArraysChainRulesCoreExt = "ChainRulesCore"
+    StaticArraysStatisticsExt = "Statistics"
+
+    [deps.StaticArrays.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+    Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+
+[[deps.StaticArraysCore]]
+git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
+uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
+version = "1.4.3"
+
 [[deps.Statistics]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
@@ -718,9 +800,9 @@ version = "0.4.0"
 
 [[deps.StructArrays]]
 deps = ["ConstructionBase", "DataAPI", "Tables"]
-git-tree-sha1 = "5a3a31c41e15a1e042d60f2f4942adccba05d3c9"
+git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
-version = "0.7.0"
+version = "0.6.21"
 
     [deps.StructArrays.extensions]
     StructArraysAdaptExt = "Adapt"

src/cmd/WorkflowRunner.jl

@@ -19,9 +19,10 @@ To execute a workflow defined in 'workflow.toml':
 
 This will initiate the execution of the workflow, with error handling in case of issues during the process.
 """
-function runWorkflow(filename::String)
+function runWorkflow(systemfilename::String, filename::String)
+    registry = OrchestratorRegistry.deploy(systemfilename)
     try
-        FACTWorkflowManager.run_file(filename)       
+        FACTWorkflowManager.run_file(filename, registry)       
     catch e
         println("An error occurred running worflow: ", e)
     end