Updated docker base image and fixed SB credentials propagation.

CHANGELOG

@@ -14,7 +14,6 @@ Added:
 - license
 - changelog
 - contributing
-- 2023 EU NUTS population data
 Fixed:
 - updated docker base image
 

Dockerfile

-FROM mariadb:11.1
+FROM mariadb:11.4
 
 # copy directories with scripts
 COPY inputs/update_sys.sh /root/inputs/update_sys.sh

gen_data.sh

 #!/bin/bash
 
+# Function to display help
+function show_help() {
+    echo "Usage: $0 <host> <user> <password>"
+    echo ""
+    echo "This script sets up the database and loads the data."
+    echo ""
+    echo "Arguments:"
+    echo "  host       Database host"
+    echo "  user       Database user"
+    echo "  password   Database password"
+}
+
+# Check if help is requested
+if [[ "$1" == "-h" || "$1" == "--help" ]]; then
+    show_help
+    exit 0
+fi
+
+# Check if all three parameters are provided
+if [[ $# -ne 3 ]]; then
+    echo "Error: Missing arguments."
+    show_help
+    exit 1
+fi
+
+# Assign parameters to variables
+HOST=$1
+USER=$2
+PASSWORD=$3
+
 # create database
 ./inputs/setup_db.sh
 

inputs/dump_and_drop.sh

+#!/bin/bash 
+
+# Assign parameters to variables 
+HOST=$1 
+USER=$2 
+PASSWORD=$3
+
 echo "*** Dump database:"
 mkdir -p ./dump
-mariadb-dump -h "" -u "root" -p --databases FACT_mine > ./dump/db_mine.sql
+mariadb-dump -h "$HOST" -u "$USER" -p"$PASSWORD" --databases FACT_mine > ./dump/db_mine.sql
 
 echo "*** Drop database:"
-mariadb -h "" -u "root" -p  < inputs/sql/drop_db.sql
+mariadb -h "$HOST" -u "$USER" -p"$PASSWORD"  < inputs/sql/drop_db.sql

inputs/load_data.sh

-#!/bin/bash
+#!/bin/bash 
+
+# Assign parameters to variables 
+HOST=$1 
+USER=$2 
+PASSWORD=$3
 
 # geology
 mkdir -p ./temp
 wget -O ./temp/temp.zip -N "https://ftp.maps.canada.ca/pub/nrcan_rncan/publications/STPublications_PublicationsST/223/223767/of_5529.zip"
 unzip -d ./temp/ ./temp/temp.zip
-ogr2ogr -f MySQL MySQL:FACT_mine,host=,user=root,password= ./temp/data/ArcMap9_ArcReader9/AllThemesMerged/gen.shp -nln geology -update -overwrite -lco engine=Aria -t_srs EPSG:4326
+ogr2ogr -f MySQL MySQL:FACT_mine,host=$HOST,user=$USER,password=$PASSWORD ./temp/data/ArcMap9_ArcReader9/AllThemesMerged/gen.shp -nln geology -update -overwrite -lco engine=Aria -t_srs EPSG:4326
 chmod -R u+w temp/
 sudo rm -r ./temp
 
@@ -15,7 +20,7 @@ do
   mkdir -p ./temp
   wget -O ./temp/temp.zip -N "https://mrdata.usgs.gov/${m}/${m}-csv.zip"
   unzip -d ./temp/ ./temp/temp.zip
-  ogr2ogr -f MySQL MySQL:FACT_mine,host=,user=root,password= ./temp/${m}/${m}.shp -nln ${m} -update -overwrite -lco engine=Aria -t_srs EPSG:4326
+  ogr2ogr -f MySQL MySQL:FACT_mine,host=$HOST,user=$USER,password=$PASSWORD ./temp/${m}/${m}.shp -nln ${m} -update -overwrite -lco engine=Aria -t_srs EPSG:4326
   chmod -R u+w temp/
   rm -r ./temp
 done
@@ -24,6 +29,6 @@ done
 mkdir -p ./temp
 wget -O ./temp/temp.zip -N "https://www.sciencebase.gov/catalog/file/get/594d3c8ee4b062508e39b332?name=PP1802_CritMin_Shapefiles.zip"
 unzip -d ./temp/ ./temp/temp.zip
-ogr2ogr -f MySQL MySQL:FACT_mine,host=,user=root,password= ./temp/PP1802_CritMin_pts.shp -nln global_selected -update -overwrite -lco engine=Aria -t_srs EPSG:4326
+ogr2ogr -f MySQL MySQL:FACT_mine,host=$HOST,user=$USER,password=$PASSWORD ./temp/PP1802_CritMin_pts.shp -nln global_selected -update -overwrite -lco engine=Aria -t_srs EPSG:4326
 chmod -R u+w temp/
 rm -r ./temp

inputs/setup_db.sh

+#!/bin/bash 
+
+# Assign parameters to variables 
+HOST=$1 
+USER=$2 
+PASSWORD=$3
+
 echo "*** Create database:"
-mariadb -h "" -u "root" -p  < inputs/sql/create_db.sql
+mariadb --h "$HOST" -u "$USER" -p"$PASSWORD" < inputs/sql/create_db.sql
 #echo "*** Create tables:"
 #mariadb -h "" -u "root" -p  < inputs/sql/create_tables.sql