Fixing depreciated loc behavior with list and not available columns in toobsvect

bin/pycif_test.sh

@@ -7,5 +7,5 @@ export PYCIF_DATATEST=/tmp/PYCIF_DATA_TEST/
 #    --html reports/pytest.html --self-contained-html --junitxml=reports/pytest.xml --collect-only ../tests/dummy/
 cd ../
 #pytest -s -m "test_in_ci" --html reports/pytest.html --self-contained-html
-pytest -s -m "test_in_ci and dummy" --basetemp=/home/satellites13/aberchet/pytest/ \
+pytest -s -m "test_in_ci and dummy" / #--basetemp=/home/satellites13/aberchet/pytest/ \
     --html reports/pytest.html --self-contained-html

pycif-tests.Dockerfile

@@ -11,8 +11,12 @@ RUN cd /tmp/CIF/ \
     && python setup.py develop --user -u \
     && python setup.py develop --user
 
-RUN cd /tmp/CIF/bin \
-    && ./pycif_test.sh
+#RUN cd /tmp/CIF/bin \
+#    && ./pycif_test.sh
+
+RUN cd /tmp/CIF/config_files/tuto_gauss \
+    && python -m pycif config_dummy_fwd.yml
+
 
 RUN ls -R /tmp/PYCIF_DATA_TEST
 

pycif/plugins/transforms/system/toobsvect/__init__.py

@@ -51,9 +51,12 @@ def ini_mapper(
     if hasattr(transform.orig_parameter_plg, "datastore"):
         # Fetch observations to define metadata
         ds = transform.orig_parameter_plg.datastore
-        default_dict["metadata"] = \
-            ds.loc[:, ["lon", "lat", "alt",
-                       "station", "network", "date", "duration"]]
+        valid_columns = \
+            ds.columns.intersection(["lon", "lat", "alt",
+                                     "station", "network",
+                                     "date", "duration"])
+
+        default_dict["metadata"] = ds.loc[:, valid_columns]
         
         #
         # domain_trcr = Domain()