pycif-ubuntu.TM5.Dockerfile

# Build a Docker image that contains all requirements to run the PyCIF CI.
FROM ubuntu:20.10

RUN apt update \
    && DEBIAN_FRONTEND=noninteractive apt install -y software-properties-common rsync git \
    && apt update \
# Install Python
    && DEBIAN_FRONTEND=noninteractive apt install -y python3.9 python3-pip \
# Install GDAL
    && apt-get install -y gdal-bin libgdal-dev \
    && pip install numpy GDAL \
# Install important packages
	&& DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential xmlstarlet gfortran libeccodes0 graphviz \
	&& pip install scipy tox==3.23.1 sphinx sphinxcontrib-plantuml graphviz \
	               pyproj cython numpy pandas matplotlib==3.3.4 bottleneck \
# Install MPI
    && apt-get install -y libopenmpi-dev openmpi-bin libhdf5-openmpi-dev \
# Install NetCDF
    && cd /tmp \
    && apt install -y wget \
    && wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.5.3.tar.gz \
    && tar -xf netcdf-fortran-4.5.3.tar.gz \
    && cd netcdf-fortran-4.5.3 \
    && ./configure --prefix=${NCDIR} --disable-netcdf-4 \
    && make install;


# Install utilities for TM5
RUN apt-get install -y  tcsh bison flex openjdk-8-jdk\
    && mkdir -p /usr/local/gfortran;

# Copy libraries and compile them
COPY ./TM5_libs /tmp/TM5_libs

WORKDIR /tmp/TM5_libs

RUN ./INSTALL_ALL.sh

# Install python packages to install pycif locally
RUN apt update \
    && apt-get install -y python3-yaml \
    && pip install pytest pytest-html pyyaml virtualenv==20.4.7;

# Install pycif on the container
COPY ./ /tmp/CIF

WORKDIR /tmp/CIF/

RUN python3 setup.py develop

# Command to run at execution
COPY ./bin/docker_entrypoint.sh /bin/

# Create directories
RUN mkdir /workdir/ \
    && mkdir /config/;

ENTRYPOINT ["docker_entrypoint.sh"]