From 55c1d309a0efcb3f960b9a4df3c7dcdfd002bd8d Mon Sep 17 00:00:00 2001
From: Ignacio Pisso <Ignacio.Pisso@nilu.no>
Date: Wed, 4 Jul 2018 16:41:41 +0200
Subject: [PATCH] export and info mode on laptop
---
export_flexgen.sh | 6 ++++++
loop_on_pathnames_laptop.sh | 43 +++++++++++++++++++++++++++++++++++++
run_all_sl_laptop | 19 ++++++++++++++++
3 files changed, 68 insertions(+)
create mode 100755 export_flexgen.sh
create mode 100755 loop_on_pathnames_laptop.sh
create mode 100755 run_all_sl_laptop
diff --git a/export_flexgen.sh b/export_flexgen.sh
new file mode 100755
index 0000000..5c78f10
--- /dev/null
+++ b/export_flexgen.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+target=$1 #/Users/ignacio/todo/doing/flexpart/flex_gen_input/2018-07-03
+cp define_default_run.sh $target
+cp Makefile $target
+cp loop_on_pathnames_laptop.sh $target
+cp run_all_sl_laptop $target
diff --git a/loop_on_pathnames_laptop.sh b/loop_on_pathnames_laptop.sh
new file mode 100755
index 0000000..09cc010
--- /dev/null
+++ b/loop_on_pathnames_laptop.sh
@@ -0,0 +1,43 @@
+#!/bin/bash
+
+#OUTPUT="$(ls -1 pathnames*)"
+OUTPUTdefault="$(ls -1 pathnames*)"
+
+OUTPUT=${OUTPUTvar:-$OUTPUTdefault}
+
+OUTPUTpwd="$(pwd)"
+
+FLEXPARTdefault=FLEXPART_8d70e43
+#FLEXPART=FLEXPART_8d70e43
+FLEXPART=${FLEXPARTvar:-$FLEXPARTdefault}
+
+echo $OUTPUT
+
+for i in ${OUTPUT}
+do
+
+#FP_slurm_batch_sl=slurm_batch_$i.sl
+FP_slurm_batch_sl=batch_dry_$i.sl
+#FP_slurm_batch_sl=toto.sl
+
+ echo '#!/bin/bash' > $FP_slurm_batch_sl
+ echo '#SBATCH -J ' FP_$i >> $FP_slurm_batch_sl
+ echo '#SBATCH -D ' ${OUTPUTpwd} ' # working directory of script' >> $FP_slurm_batch_sl
+ echo '#SBATCH --mem=8092 # total memory requirement for the node (in MB)' >> $FP_slurm_batch_sl
+ echo '#SBATCH --mem-per-cpu=1024 # minimum amount of memory required pr. allocated CPU' >> $FP_slurm_batch_sl
+ echo '#SBATCH -n 1 # number of tasks, e.g. number of cores' >> $FP_slurm_batch_sl
+ echo '#SBATCH -N 1 # ensure all cores are on the same host/machine' >> $FP_slurm_batch_sl
+ echo '#SBATCH --mail-type=ALL # when to send e-mail (valid options are: BEGIN,END,FAIL,REQUEUE,ALL)' >> $FP_slurm_batch_sl
+ echo '#SBATCH --mail-user=ip@nilu.no # who to send email to' >> $FP_slurm_batch_sl
+ echo '#SBATCH -o output-%N-%j.out # filename to send standard out to' >> $FP_slurm_batch_sl
+ echo '#SBATCH -e error-%N-%j.err # filename to send standard error to' >> $FP_slurm_batch_sl
+ echo ' ' >> $FP_slurm_batch_sl
+ #echo 'srun -l ' $FLEXPART $i >> $FP_slurm_batch_sl
+ FLEXPART_run_string="$FLEXPART $i -i"
+
+ #echo $FLEXPART -i $i >> $FP_slurm_batch_sl
+ #echo $FLEXPART $i -i2
+ echo $FLEXPART_run_string >> $FP_slurm_batch_sl
+ echo $FLEXPART_run_string
+done
+
diff --git a/run_all_sl_laptop b/run_all_sl_laptop
new file mode 100755
index 0000000..5874b53
--- /dev/null
+++ b/run_all_sl_laptop
@@ -0,0 +1,19 @@
+#!/bin/bash
+
+#OUTPUT="$(ls -1 *.sl)"
+OUTPUTdefault="$(ls -1 *.sl)"
+OUTPUT=${OUTPUTvar:-$OUTPUTdefault}
+
+#rm joblist
+
+
+for i in ${OUTPUT}
+do
+ echo sbatch $i #| tee -a joblist1$group
+ #source $i | tee -a joblist2$group
+ source $i | tee stdout$i # -a joblist2$group
+ echo '##########################################'
+done
+
+
+
--
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