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Commits (3)
#!/bin/bash
#define version number
echo CREATE A NEW FLEXPART DISTRIBUTION
#define version number
githash=$(git rev-parse --short --verify HEAD)
echo githash $githash
version=10.3beta5_$githash
version=10.3.1_$githash
echo version $version
# define tarball name
targetdir=../flexpart_distribution/
tarball_tmp=${targetdir}flexpart_v$version
echo targetdir $targetdir
distribution_name=flexpart_v$version
tarball_tmp=${targetdir}flexpart_v$version
echo tarball_tmp $tarball_tmp
#tarball=${targetdir}flexpart_v$version.tar
tarball=${tarball_tmp}.tar
echo tarball $tarball
# clean old package
if [ -d $tarball_tmp ]; then
echo $tarball_tmp exists: move to $tarball_tmp.bk and exit
mkdir $tarball_tmp.bk
mv $tarball_tmp ${tarball_tmp}.bk/
mv $tarball ${tarball_tmp}.bk/
exit
echo
echo clean old tarball
hora=$(date +"%Y-%m-%d_%H%M%S")
tarball_tmp_bk=$tarball_tmp$tarball_tmp_$hora
echo tarball_tmp=$tarball_tmp exists: move to tarball_tmp_bk=$tarball_tmp_bk #and exit
mkdir $tarball_tmp_bk
mv $tarball_tmp $tarball_tmp_bk/
mv $tarball $tarball_tmp_bk/
#exit
echo old files moved to tarball_tmp_bk=$tarball_tmp_bk
echo
fi
echo ---------------------------------------------------------
echo ')' create basic dir structure
echo ')' create basis dir $tarball_tmp
mkdir $tarball_tmp
echo ---------------------------------------------------------
echo
echo ---------------------------------------------------------
##############################################################
echo ')' pathnames
echo ')' copy pathnames
#cp pathnames_distribution $tarball_tmp/pathnames
cp pathnames $tarball_tmp/pathnames
echo ---------------------------------------------------------
##############################################################
echo ')' src/
echo
echo ---------------------------------------------------------
echo ')' copy src/
mkdir $tarball_tmp/src
cp src/*.f90 $tarball_tmp/src
cp -r src/gributils $tarball_tmp/src
......@@ -42,7 +62,11 @@ cp src/makefile $tarball_tmp/src
#cp src/makefile.gfs $tarball_tmp/src
echo ---------------------------------------------------------
################################################################
echo ')' options
echo
echo ---------------------------------------------------------
echo ')' copy options/
# (for the distribution they work with the defult flex_ecmwf test winds)
#cp -r options_flex_ecmwf_EA $tarball_tmp/options
mkdir $tarball_tmp/options
......@@ -53,27 +77,41 @@ for i in $user_input_files
do
echo $i
cp -r options/$i $tarball_tmp/options
#echo copy $i to $tarball_tmp/options
done
mkdir $tarball_tmp/options/SPECIES
cp options/SPECIES/SPECIES* $tarball_tmp/options/SPECIES/
cp options/SPECIES/specoverview.f90 $tarball_tmp/options/SPECIES/
echo copy options/SPECIES/ to $tarball_tmp/options/SPECIES/
echo ---------------------------------------------------------
################################################################
echo ')' AVAILABLE
echo
echo ---------------------------------------------------------
echo ')' copy AVAILABLE
#cp AVAILABLE_flex_ecmwf_EA $tarball_tmp/AVAILABLE
cp AVAILABLE $tarball_tmp/AVAILABLE
echo ---------------------------------------------------------
echo
echo ---------------------------------------------------------
################################################################
echo ')' output / # mkdir $tarball_tmp/output
echo ')' create output/ # mkdir $tarball_tmp/output
mkdir $tarball_tmp/output
echo ---------------------------------------------------------
################################################################
echo
echo ---------------------------------------------------------
echo ')' preprocess/
mkdir $tarball_tmp/preprocess
#############################
echo
echo -----------------flex_extract-------------------
#echo '6)' mkdir $tarball_tmp/flex_extract [a separate repository]
#mkdir $tarball_tmp/preprocess
......@@ -87,16 +125,17 @@ mkdir $tarball_tmp/preprocess/flex_extract
#cp -r flex_ecmwf_src/* $tarball_tmp/preprocess/flex_extract/
## cp -r flex_extract/work/EA* $tarball_tmp/preprocess/flex_extract/work
echo include flex_extract v7.0.4 b7c1c04a204c91e53759ef590504bf52dfaece64
flex_extract=../flex_extract_v7.0.4/
echo include flex_extract v7.0.4 b7c1c04a204c91e53759ef590504bf52dfaece64
echo from $flex_extract [use git modules?] IP 3/2018
cp $flex_extract/README.md $tarball_tmp/preprocess/flex_extract
cp -r $flex_extract/docs $tarball_tmp/preprocess/flex_extract
cp -r $flex_extract/grib_templates $tarball_tmp/preprocess/flex_extract
cp -r $flex_extract/python $tarball_tmp/preprocess/flex_extract
cp -r $flex_extract/src $tarball_tmp/preprocess/flex_extract
echo flex_extract copied
echo ---------------------------------------------------------
#echo '10)' cp example generating scripts [a separate repository]
......@@ -105,9 +144,12 @@ cp -r $flex_extract/src $tarball_tmp/preprocess/flex_extract
#mkdir $tarball_tmp/examples
#cp -r examples/*.sh $tarball_tmp/examples/
#cp -r examples/Makefile $tarball_tmp/examples/
echo
echo ---------------------------------------------------------
################################################################
echo postprocess/
echo ')' postprocess/
postprocess=postprocess
mkdir $tarball_tmp/$postprocess
......@@ -118,29 +160,30 @@ mkdir $tarball_tmp/$postprocess/flex_read_fortran
cp $postprocess/flex_read_fortran/*.f $tarball_tmp/$postprocess/flex_read_fortran
cp $postprocess/flex_read_fortran/*.f90 $tarball_tmp/$postprocess/flex_read_fortran
cp $postprocess/flex_read_fortran/makefile $tarball_tmp/$postprocess/flex_read_fortran
echo flex_read_fortran copied
echo -----------------flex_read_matlab-------------------
echo flex_read_fortran NOT copied
# add matlab reading routines
#mkdir $tarball_tmp/postprocess/flex_read_matlab
#cp postprocess/flex_read_matlab/*.m $tarball_tmp/postprocess/flex_read_matlab
echo ---------------------------------------------------------
###############################################################
echo
echo ---------------------------------------------------------
echo tests/
echo ')' tests/
###############################################################
#echo '13) tests'
mkdir $tarball_tmp/tests
###############################################################
echo -----------------flex_read_fortran-------------------
#echo 'b) ./tests/flex_read_fortran/'
echo fixme
#mkdir $tarball_tmp/tests/flex_read_fortran
#cp tests/flex_read_fortran/test_read_default.sh $tarball_tmp/tests/flex_read_fortran
###############################################################
echo -----------------examples-------------------
......@@ -175,29 +218,96 @@ cp tests/compare_grids.sh $tarball_tmp/tests/
# list of examples with units
cp tests/declare_examples $tarball_tmp/tests/
echo
# ~/repos/flexpart/tests$./compare_grids.sh
#echo mkdir $tarball_tmp/tests/examples2/
#echo cp tests/examples2/setup.sh $tarball_tmp/tests/examples2/
echo --repeat examples-------------------
#echo FIXME
# echo --repeat examples-------------------
# echo FIXME
###############################################################
echo -----------------ctbto-------------------
mkdir $tarball_tmp/tests/ctbto
#echo -----------------ctbto-------------------
# mkdir $tarball_tmp/tests/ctbto
# cp -r tests/NILU/test_1 $tarball_tmp/tests/
# cp -r tests/default_cases $tarball_tmp/tests/
tar cvf $tarball $tarball_tmp
echo ---------------------------------------------------------
echo create tarball
#tar cvf $tarball $tarball_tmp
#tar cf $tarball $tarball_tmp
#cd
cd $targetdir
tar cf $distribution_name.tar $distribution_name
pwd
echo $tarball complete
echo tarball $tarball complete
echo exported untarred files in $tarball_tmp
exit
#return
###############################################################
# obtain $FLEXHOME (and set)
#1 cd $FLEXHOME/src
#2 compile
#
#[laptop] source /Users/ignacio/repos/flexpart/src/make_in_laptop.sh
# [njord] make
# ->created executable (FLEXPART)
#3 execute in src (absolute paths)
#
#[laptop] cp /Users/ignacio/repos/flexpart/src/pathnames .
#[njord] FIXME
#
# mkdir output
# ./FLEXPART
# ->created output in output/
#4 read output
# cd $FLEXHOME/postprocess/flex_read_fortran/
# make
# -> printheader* printgrid* flex_read_compare2*
#/postprocess/flex_read_fortran$./printheader ../../src/output/
#/postprocess/flex_read_fortran$./printgrid ../../src/output/ conc
# -> output in stdout (max: 11122924.0 sum: 90330784.0)
#5 execute in $FLEXHOME
# cd $FLEXHOME
# get winds
#[laptop] cp -r ~/repos/flex_winds/work/ ./preprocess/flex_extract/
#[njord] curl https://folk.nilu.no/~ignacio/FLEXPART/EA120101.tar --output EA120101.tar ; tar -xvf EA120101.tar ; mv flex_extract/work preprocess/flex_extract/ ; rmdir flex_extract
# src/FLEXPART
# -> output in $FLEXHOME/output/
#6 read output
# postprocess/flex_read_fortran/printheader output/
# postprocess/flex_read_fortran/printgrid output/ conc
# -> output in stdout ( max: 11578738.0 sum: 104058720.)
#7 gnererate examples
# cd $FLEXHOME/tests/examples
#make run
#make examples
#make batch
#./run_batch_cl.sh
#make (set_default_example.sh)
#tests/examples$../../src/FLEXPART
#output
#8 read examples:
#cd $FLEXHOME/tests/read_examples
# ./read_headers.sh
# ./read_grids.sh
#9 compare examples with reference