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flexpart
flexpart
Commits
f203036c
Commit
f203036c
authored
Jun 18, 2019
by
Ignacio Pisso
Browse files
Merge branch 'release-10' into dev
parents
6741557b
941db732
Changes
1
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create_tarball.sh
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f203036c
#!/bin/bash
#define version number
echo
CREATE A NEW FLEXPART DISTRIBUTION
#define version number
githash
=
$(
git rev-parse
--short
--verify
HEAD
)
echo
githash
$githash
version
=
10.3beta5_
$githash
version
=
10.3.1_
$githash
echo
version
$version
# define tarball name
targetdir
=
../flexpart_distribution/
tarball_tmp
=
${
targetdir
}
flexpart_v
$version
echo
targetdir
$targetdir
distribution_name
=
flexpart_v
$version
tarball_tmp
=
${
targetdir
}
flexpart_v
$version
echo
tarball_tmp
$tarball_tmp
#tarball=${targetdir}flexpart_v$version.tar
tarball
=
${
tarball_tmp
}
.tar
echo
tarball
$tarball
# clean old package
if
[
-d
$tarball_tmp
]
;
then
echo
$tarball_tmp
exists: move to
$tarball_tmp
.bk and
exit
mkdir
$tarball_tmp
.bk
mv
$tarball_tmp
${
tarball_tmp
}
.bk/
mv
$tarball
${
tarball_tmp
}
.bk/
exit
echo
echo
clean old tarball
hora
=
$(
date
+
"%Y-%m-%d_%H%M%S"
)
tarball_tmp_bk
=
$tarball_tmp$tarball_tmp_$hora
echo
tarball_tmp
=
$tarball_tmp
exists: move to
tarball_tmp_bk
=
$tarball_tmp_bk
#and exit
mkdir
$tarball_tmp_bk
mv
$tarball_tmp
$tarball_tmp_bk
/
mv
$tarball
$tarball_tmp_bk
/
#exit
echo
old files moved to
tarball_tmp_bk
=
$tarball_tmp_bk
echo
fi
echo
---------------------------------------------------------
echo
')'
create basi
c
dir
structure
echo
')'
create basi
s
dir
$tarball_tmp
mkdir
$tarball_tmp
echo
---------------------------------------------------------
echo
echo
---------------------------------------------------------
##############################################################
echo
')'
pathnames
echo
')'
copy pathnames
#cp pathnames_distribution $tarball_tmp/pathnames
cp
pathnames
$tarball_tmp
/pathnames
echo
---------------------------------------------------------
##############################################################
echo
')'
src/
echo
echo
---------------------------------------------------------
echo
')'
copy src/
mkdir
$tarball_tmp
/src
cp
src/
*
.f90
$tarball_tmp
/src
cp
-r
src/gributils
$tarball_tmp
/src
...
...
@@ -42,7 +62,11 @@ cp src/makefile $tarball_tmp/src
#cp src/makefile.gfs $tarball_tmp/src
echo
---------------------------------------------------------
################################################################
echo
')'
options
echo
echo
---------------------------------------------------------
echo
')'
copy options/
# (for the distribution they work with the defult flex_ecmwf test winds)
#cp -r options_flex_ecmwf_EA $tarball_tmp/options
mkdir
$tarball_tmp
/options
...
...
@@ -53,27 +77,41 @@ for i in $user_input_files
do
echo
$i
cp
-r
options/
$i
$tarball_tmp
/options
#echo copy $i to $tarball_tmp/options
done
mkdir
$tarball_tmp
/options/SPECIES
cp
options/SPECIES/SPECIES
*
$tarball_tmp
/options/SPECIES/
cp
options/SPECIES/specoverview.f90
$tarball_tmp
/options/SPECIES/
echo
copy options/SPECIES/ to
$tarball_tmp
/options/SPECIES/
echo
---------------------------------------------------------
################################################################
echo
')'
AVAILABLE
echo
echo
---------------------------------------------------------
echo
')'
copy AVAILABLE
#cp AVAILABLE_flex_ecmwf_EA $tarball_tmp/AVAILABLE
cp
AVAILABLE
$tarball_tmp
/AVAILABLE
echo
---------------------------------------------------------
echo
echo
---------------------------------------------------------
################################################################
echo
')'
output /
# mkdir $tarball_tmp/output
echo
')'
create output/
# mkdir $tarball_tmp/output
mkdir
$tarball_tmp
/output
echo
---------------------------------------------------------
################################################################
echo
echo
---------------------------------------------------------
echo
')'
preprocess/
mkdir
$tarball_tmp
/preprocess
#############################
echo
echo
-----------------flex_extract-------------------
#echo '6)' mkdir $tarball_tmp/flex_extract [a separate repository]
#mkdir $tarball_tmp/preprocess
...
...
@@ -87,16 +125,17 @@ mkdir $tarball_tmp/preprocess/flex_extract
#cp -r flex_ecmwf_src/* $tarball_tmp/preprocess/flex_extract/
## cp -r flex_extract/work/EA* $tarball_tmp/preprocess/flex_extract/work
echo
include flex_extract v7.0.4 b7c1c04a204c91e53759ef590504bf52dfaece64
flex_extract
=
../flex_extract_v7.0.4/
echo
include flex_extract v7.0.4 b7c1c04a204c91e53759ef590504bf52dfaece64
echo
from
$flex_extract
[
use git modules?] IP 3/2018
cp
$flex_extract
/README.md
$tarball_tmp
/preprocess/flex_extract
cp
-r
$flex_extract
/docs
$tarball_tmp
/preprocess/flex_extract
cp
-r
$flex_extract
/grib_templates
$tarball_tmp
/preprocess/flex_extract
cp
-r
$flex_extract
/python
$tarball_tmp
/preprocess/flex_extract
cp
-r
$flex_extract
/src
$tarball_tmp
/preprocess/flex_extract
echo
flex_extract copied
echo
---------------------------------------------------------
#echo '10)' cp example generating scripts [a separate repository]
...
...
@@ -105,9 +144,12 @@ cp -r $flex_extract/src $tarball_tmp/preprocess/flex_extract
#mkdir $tarball_tmp/examples
#cp -r examples/*.sh $tarball_tmp/examples/
#cp -r examples/Makefile $tarball_tmp/examples/
echo
echo
---------------------------------------------------------
################################################################
echo
postprocess/
echo
')'
postprocess/
postprocess
=
postprocess
mkdir
$tarball_tmp
/
$postprocess
...
...
@@ -118,29 +160,30 @@ mkdir $tarball_tmp/$postprocess/flex_read_fortran
cp
$postprocess
/flex_read_fortran/
*
.f
$tarball_tmp
/
$postprocess
/flex_read_fortran
cp
$postprocess
/flex_read_fortran/
*
.f90
$tarball_tmp
/
$postprocess
/flex_read_fortran
cp
$postprocess
/flex_read_fortran/makefile
$tarball_tmp
/
$postprocess
/flex_read_fortran
echo
flex_read_fortran copied
echo
-----------------flex_read_matlab-------------------
echo
flex_read_fortran NOT copied
# add matlab reading routines
#mkdir $tarball_tmp/postprocess/flex_read_matlab
#cp postprocess/flex_read_matlab/*.m $tarball_tmp/postprocess/flex_read_matlab
echo
---------------------------------------------------------
###############################################################
echo
echo
---------------------------------------------------------
echo
tests/
echo
')'
tests/
###############################################################
#echo '13) tests'
mkdir
$tarball_tmp
/tests
###############################################################
echo
-----------------flex_read_fortran-------------------
#echo 'b) ./tests/flex_read_fortran/'
echo
fixme
#mkdir $tarball_tmp/tests/flex_read_fortran
#cp tests/flex_read_fortran/test_read_default.sh $tarball_tmp/tests/flex_read_fortran
###############################################################
echo
-----------------examples-------------------
...
...
@@ -175,29 +218,96 @@ cp tests/compare_grids.sh $tarball_tmp/tests/
# list of examples with units
cp
tests/declare_examples
$tarball_tmp
/tests/
echo
# ~/repos/flexpart/tests$./compare_grids.sh
#echo mkdir $tarball_tmp/tests/examples2/
#echo cp tests/examples2/setup.sh $tarball_tmp/tests/examples2/
echo
--repeat
examples-------------------
#echo FIXME
#
echo --repeat examples-------------------
#
echo FIXME
###############################################################
echo
-----------------ctbto-------------------
mkdir
$tarball_tmp
/tests/ctbto
#
echo -----------------ctbto-------------------
#
mkdir $tarball_tmp/tests/ctbto
# cp -r tests/NILU/test_1 $tarball_tmp/tests/
# cp -r tests/default_cases $tarball_tmp/tests/
tar
cvf
$tarball
$tarball_tmp
echo
---------------------------------------------------------
echo
create tarball
#tar cvf $tarball $tarball_tmp
#tar cf $tarball $tarball_tmp
#cd
cd
$targetdir
tar
cf
$distribution_name
.tar
$distribution_name
pwd
echo
$tarball
complete
echo
tarball
$tarball
complete
echo
exported untarred files
in
$tarball_tmp
exit
#return
###############################################################
# obtain $FLEXHOME (and set)
#1 cd $FLEXHOME/src
#2 compile
#
#[laptop] source /Users/ignacio/repos/flexpart/src/make_in_laptop.sh
# [njord] make
# ->created executable (FLEXPART)
#3 execute in src (absolute paths)
#
#[laptop] cp /Users/ignacio/repos/flexpart/src/pathnames .
#[njord] FIXME
#
# mkdir output
# ./FLEXPART
# ->created output in output/
#4 read output
# cd $FLEXHOME/postprocess/flex_read_fortran/
# make
# -> printheader* printgrid* flex_read_compare2*
#/postprocess/flex_read_fortran$./printheader ../../src/output/
#/postprocess/flex_read_fortran$./printgrid ../../src/output/ conc
# -> output in stdout (max: 11122924.0 sum: 90330784.0)
#5 execute in $FLEXHOME
# cd $FLEXHOME
# get winds
#[laptop] cp -r ~/repos/flex_winds/work/ ./preprocess/flex_extract/
#[njord] curl https://folk.nilu.no/~ignacio/FLEXPART/EA120101.tar --output EA120101.tar ; tar -xvf EA120101.tar ; mv flex_extract/work preprocess/flex_extract/ ; rmdir flex_extract
# src/FLEXPART
# -> output in $FLEXHOME/output/
#6 read output
# postprocess/flex_read_fortran/printheader output/
# postprocess/flex_read_fortran/printgrid output/ conc
# -> output in stdout ( max: 11578738.0 sum: 104058720.)
#7 gnererate examples
# cd $FLEXHOME/tests/examples
#make run
#make examples
#make batch
#./run_batch_cl.sh
#make (set_default_example.sh)
#tests/examples$../../src/FLEXPART
#output
#8 read examples:
#cd $FLEXHOME/tests/read_examples
# ./read_headers.sh
# ./read_grids.sh
#9 compare examples with reference
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