Skip to content

GitLab

Commit cda0919f authored by flexpart's avatar flexpart
Browse files

Merge remote-tracking branch 'espen/dev' into dev

parents 6c2627f5 b724ea3a
Show whitespace changes
Inline Side-by-side
README_PARALLEL.md 100755 → 100644
View file @ cda0919f
FLEXPART VERSION 9.2.0 (MPI)
FLEXPART VERSION 10.0 beta (MPI)
Description
-----------
......@@ -61,7 +61,7 @@ Implementation
among the running processes. In the code, variables like 'maxpart' and
'numpart' are complemented by variables 'maxpart_mpi' and 'numpart_mpi'
which are the run-time determined number of particles per process, i.e,
maxpart_mpi = maxpart/[number of processes]. The variable 'numpart'
maxpart_mpi = maxpart/np, where np are the number of processes. The variable 'numpart'
is still used in the code, but redefined to mean 'number of particles
per MPI process'
......@@ -78,7 +78,7 @@ Implementation
be faster than running with np=3 and no dedicated 'reader' process.
But it is also possible that the
program will run even faster if the 4th process is participating in
the calculation of particle trajectories. This will largely depend on
the calculation of particle trajectories instead. This will largely depend on
the problem size (total number of particles in the simulation, resolution
of grids etc) and hardware being used (disk speed/buffering, memory
bandwidth etc).
......@@ -119,7 +119,7 @@ Performance efficency considerations
As the parallization is based on particles, it follows that if
FLEXPART-MPI is run with no (or just a few) particles, no performance
improvement is possible. In this case, most processing time is spent
in the 'getfields'-routine (ECMWF).
in the 'getfields'-routine.
A) Running without dedicated reader process
----------------------------------------
......@@ -172,7 +172,7 @@ What is implemented in the MPI version
* Domain-filling trajectory calculations
* Nested wind fields
-The following will probably/possibly not work (untested/under developement):
-The following will most probably not work (untested/under developement):
* Backward runs
......
options/AGECLASSES 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/COMMAND
View file @ cda0919f
......@@ -11,7 +11,7 @@
LSYNCTIME= 900,
CTL= -5.0000000 ,
IFINE= 4,
IOUT= 1,
IOUT= 9,
IPOUT= 0,
LSUBGRID= 1,
LCONVECTION= 1,
......@@ -27,4 +27,5 @@
LINIT_COND= 0,
SURF_ONLY= 0,
CBLFLAG= 0,
OHFIELDS_PATH= "../../flexin/",
/
options/COMMAND.alternative 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/COMMAND.reference 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/IGBP_int1.dat 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/OH_7lev_agl.dat 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/OUTGRID 100755 → 100644
View file @ cda0919f
......@@ -5,72 +5,152 @@
* *
********************************************************************************
1. ------.---- 4X,F11.4
-179.0000 GEOGRAFICAL LONGITUDE OF LOWER LEFT CORNER OF OUTPUT GRID
OUTLONLEFT (left boundary of the first grid cell - not its centre)
-179.0000
2. ------.---- 4X,F11.4
-90.0000 GEOGRAFICAL LATITUDE OF LOWER LEFT CORNER OF OUTPUT GRID
OUTLATLOWER (lower boundary of the first grid cell - not its centre)
3. ----- 4X,I5
720 NUMBER OF GRID POINTS IN X DIRECTION (= No. of cells + 1)
NUMXGRID
4. ----- 4X,I5
360 NUMBER OF GRID POINTS IN Y DIRECTION (= No. of cells + 1)
NUMYGRID
-90.0000
360
180
1.000
1.000
400.0
5. ------.--- 4X,F10.3
0.50 GRID DISTANCE IN X DIRECTION
DXOUTLON
6. ------.--- 4X,F10.3
0.50 GRID DISTANCE IN Y DIRECTION
DYOUTLAT
10. -----.- 4X, F7.1
1000.0
LEVEL 1 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
2000.0
LEVEL 2 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
3000.0
LEVEL 3 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
4000.0
LEVEL 4 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
5000.0
LEVEL 5 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
6000.0
LEVEL 6 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
7000.0
LEVEL 7 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
8000.0
LEVEL 8 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
9000.0
LEVEL 9 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
10000.0
LEVEL10 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
11000.0
LEVEL11 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
12000.0
LEVEL12 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
13000.0
LEVEL13 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
14000.0
LEVEL14 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
15000.0
LEVEL15 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
16000.0
LEVEL16 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
17000.0
LEVEL17 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
18000.0
LEVEL18 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
19000.0
LEVEL19 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
20000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
21000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
22000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
23000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
24000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
25000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
26000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
27000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
28000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
29000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
50000.0
10. -----.- 4X, F7.1
30000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
10. -----.- 4X, F7.1
40000.0
LEVEL20 HEIGHT OF LEVEL (UPPER BOUNDARY)
options/RECEPTORS 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/RELEASES.alternative 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/RELEASES.reference 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/SPECIES/spec_overview 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/surfdata.t 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
options/surfdepo.t 100755 → 100644
View file @ cda0919f
File mode changed from 100755 to 100644
src/makefile
View file @ cda0919f
......@@ -33,6 +33,7 @@ FLEXPART-ECMWF = FP_ecmwf_gfortran
FLEXPART-GFS = FP_gfs_gfortran
FLEXPART-GFS-MPI = FP_gfs_MPI
## COMPILERS
F90 = /usr/bin/gfortran
#F90 = ${HOME}/gcc-4.9.1/bin/gfortran
......@@ -49,18 +50,19 @@ O_LEV_DBG = 0 # [0,g]
LIBS = -lgrib_api_f90 -lgrib_api -lm -ljasper -lnetcdff # -fopenmp # -llapack -lnetcdf
## 1) System libraries at NILU
# INCPATH1 = /usr/include
INCPATH1 = /xnilu_wrk/flex_wrk/bin64/grib_api/include
INCPATH1 = /usr/include
#INCPATH1 = /xnilu_wrk/flex_wrk/bin64/grib_api/include
LIBPATH1 = /xnilu_wrk/flex_wrk/bin64/grib_api/lib
# LIBPATH2 = /usr/lib/x86_64-linux-gnu
#LIBPATH2 = /usr/lib/x86_64-linux-gnu
## 2) Home-made libraries
#INCPATH2 = ${HOME}/include
INCPATH2 = /homevip/flexpart/include
LIBPATH2 = /homevip/flexpart/lib
#INCPATH2 = ${HOME}/lib
# INCPATH1 = ${HOME}/include
INCPATH2 = /homevip/flexpart/include/
LIBPATH2 = /homevip/flexpart/lib/
# LIBPATH1 = ${HOME}/lib
FFLAGS = -I$(INCPATH1) -I$(INCPATH2) -O$(O_LEV) -g -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV) -mtune=native -fuse-linker-plugin $(FUSER) # -march=native
FFLAGS = -I$(INCPATH1) -I$(INCPATH2) -O$(O_LEV) -g -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV) -mtune=native $(FUSER) # -march=native
DBGFLAGS = -I$(INCPATH1) -I$(INCPATH2) -O$(O_LEV_DBG) -g3 -ggdb3 -m64 -mcmodel=medium -fconvert=little-endian -frecord-marker=4 -fmessage-length=0 -flto=jobserver -O$(O_LEV_DBG) -fbacktrace -Warray-bounds -Wall -fcheck=all $(FUSER) # -ffpe-trap=invalid,overflow,denormal,underflow,zero -fdump-core
LDFLAGS = $(FFLAGS) -L$(LIBPATH1) -L$(LIBPATH2) $(LIBS)
......@@ -187,6 +189,9 @@ cbl.o netcdf_output_mod.o
%.o: %.mod
ecmwf: $(FLEXPART-ECMWF)
ecmwf: FC := $(F90)
ecmwf-mpi: $(FLEXPART-ECMWF-MPI)
ecmwf-mpi: FC := $(MPIF90)
......@@ -195,9 +200,6 @@ ecmwf-mpi-dbg: FFLAGS := $(DBGFLAGS)
ecmwf-mpi-dbg: LDFLAGS:= $(LDDEBUG)
ecmwf-mpi-dbg: FC := $(MPIF90)
ecmwf: $(FLEXPART-ECMWF)
ecmwf: FC := $(F90)
gfs: $(FLEXPART-GFS)
gfs: FC := $(F90)
gfs-mpi: $(FLEXPART-GFS-MPI)
......@@ -206,6 +208,9 @@ gfs-mpi: FC := $(MPIF90)
#all: $(FLEXPART-ECMWF)
#all: $(FLEXPART-ECMWF-MPI)
$(FLEXPART-ECMWF): $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_ECMWF)
+$(FC) -o $@ $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_ECMWF) $(LDFLAGS)
$(FLEXPART-ECMWF-MPI): $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) $(OBJECTS_ECMWF_MPI)
+$(FC) -o $@ $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) \
$(OBJECTS_ECMWF_MPI) $(LDFLAGS)
......@@ -216,9 +221,6 @@ $(FLEXPART-ECMWF-MPI-DBG): $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) \
+$(FC) -o $@ $(MODOBJS) $(MPI_MODOBJS) $(OBJECTS) $(OBJECTS_MPI) \
$(OBJECTS_ECMWF_MPI) $(LDFLAGS)
$(FLEXPART-ECMWF): $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_ECMWF)
+$(FC) -o $@ $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_ECMWF) $(LDFLAGS)
$(FLEXPART-GFS): $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_GFS)
+$(FC) -o $@ $(MODOBJS) $(OBJECTS) $(OBJECTS_SERIAL) $(OBJECTS_GFS) $(LDFLAGS)
......
src/random.f90 deleted 100644 → 0
View file @ 6c2627f5
!**********************************************************************
! Copyright 1998,1999,2000,2001,2002,2005,2007,2008,2009,2010 *
! Andreas Stohl, Petra Seibert, A. Frank, Gerhard Wotawa, *
! Caroline Forster, Sabine Eckhardt, John Burkhart, Harald Sodemann *
! *
! This file is part of FLEXPART. *
! *
! FLEXPART is free software: you can redistribute it and/or modify *
! it under the terms of the GNU General Public License as published by*
! the Free Software Foundation, either version 3 of the License, or *
! (at your option) any later version. *
! *
! FLEXPART is distributed in the hope that it will be useful, *
! but WITHOUT ANY WARRANTY; without even the implied warranty of *
! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
! GNU General Public License for more details. *
! *
! You should have received a copy of the GNU General Public License *
! along with FLEXPART. If not, see <http://www.gnu.org/licenses/>. *
!**********************************************************************
! Taken from Press et al., Numerical Recipes
function ran1(idum)
implicit none
integer :: idum
real :: ran1
integer,parameter :: ia=16807, im=2147483647, iq=127773, ir=2836
integer,parameter :: ntab=32, ndiv=1+(im-1)/ntab
real,parameter :: am=1./im, eps=1.2e-7, rnmx=1.-eps
integer :: j, k
integer :: iv(ntab) = (/ (0,j=1,ntab) /)
integer :: iy=0
if (idum.le.0.or.iy.eq.0) then
idum=max(-idum,1)
do j=ntab+8,1,-1
k=idum/iq
idum=ia*(idum-k*iq)-ir*k
if (idum.lt.0) idum=idum+im
if (j.le.ntab) iv(j)=idum
enddo
iy=iv(1)
endif
k=idum/iq
idum=ia*(idum-k*iq)-ir*k
if (idum.lt.0) idum=idum+im
j=1+iy/ndiv
iy=iv(j)
iv(j)=idum
ran1=min(am*iy,rnmx)
end function ran1
function gasdev(idum)
implicit none
integer :: idum
real :: gasdev, fac, r, v1, v2
integer :: iset = 0
real :: gset = 0.
real, external :: ran3
if (iset.eq.0) then
1 v1=2.*ran3(idum)-1.
v2=2.*ran3(idum)-1.
r=v1**2+v2**2
if(r.ge.1.0 .or. r.eq.0.0) go to 1
fac=sqrt(-2.*log(r)/r)
gset=v1*fac
gasdev=v2*fac
iset=1
else
gasdev=gset
iset=0
endif
end function gasdev
subroutine gasdev1(idum,random1,random2)
implicit none
integer :: idum
real :: random1, random2, fac, v1, v2, r
real, external :: ran3
1 v1=2.*ran3(idum)-1.
v2=2.*ran3(idum)-1.
r=v1**2+v2**2
if(r.ge.1.0 .or. r.eq.0.0) go to 1
fac=sqrt(-2.*log(r)/r)
random1=v1*fac
random2=v2*fac
! Limit the random numbers to lie within the interval -3 and +3
!**************************************************************
if (random1.lt.-3.) random1=-3.
if (random2.lt.-3.) random2=-3.
if (random1.gt.3.) random1=3.
if (random2.gt.3.) random2=3.
end subroutine gasdev1
function ran3(idum)
implicit none
integer :: idum
real :: ran3
integer,parameter :: mbig=1000000000, mseed=161803398, mz=0
real,parameter :: fac=1./mbig
integer :: i,ii,inext,inextp,k
integer :: mj,mk,ma(55)
save inext,inextp,ma
integer :: iff = 0
if(idum.lt.0.or.iff.eq.0)then
iff=1
mj=mseed-iabs(idum)
mj=mod(mj,mbig)
ma(55)=mj
mk=1
do i=1,54
ii=mod(21*i,55)
ma(ii)=mk
mk=mj-mk
if(mk.lt.mz)mk=mk+mbig
mj=ma(ii)
end do
do k=1,4
do i=1,55
ma(i)=ma(i)-ma(1+mod(i+30,55))
if(ma(i).lt.mz)ma(i)=ma(i)+mbig
end do
end do
inext=0
inextp=31
idum=1
endif
inext=inext+1
if(inext.eq.56)inext=1
inextp=inextp+1
if(inextp.eq.56)inextp=1
mj=ma(inext)-ma(inextp)
if(mj.lt.mz)mj=mj+mbig
ma(inext)=mj
ran3=mj*fac
end function ran3
! (C) Copr. 1986-92 Numerical Recipes Software US.
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment