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Commit 4bdca6b8 authored by Ignacio Pisso's avatar Ignacio Pisso
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add define_default_run to branch NILUJenkins for testing on build01

parent 37d62221
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examples/Makefile 0 → 100644
View file @ 4bdca6b8
options:
./define_default_run.sh
slfiles:
./loop_on_pathnames.sh
run:
./run_all_sl
clean: this_is_a_run
rm -r options*
cleanrun:
rm *.out rm *.err *.sl
examples/define_default_run.sh 0 → 100755
View file @ 4bdca6b8
#!/bin/bash
# Ignacio Pisso 2018-03-29
# generate FLEXPART variations on the default for parameter sweep hello world tests
#define input options
options_repo=~/repos/flexpart/options
#define winds
pathnames_local=~/repos/flexpart/pathnames
#copy default
cp -r $options_repo options
#sed -i '/IOUT=/c\ IOUT= 2,' options2/COMMAND
mkdir output
cp $pathnames_local pathnames
#sed -i "s/\boptions\b/options2/g" pathnames2
#sed -i "s/\boutput\b/output2/g" pathnames2
#variations on base
# A) forward runs: 1,2,3,5
# IOUT= 1 (conc)
echo '# IOUT= 1 (conc)'
cp -r options options1
# no change
mkdir output1
cp pathnames pathnames1
#change 2 lines in pathnames1
sed -i "s/\boptions\b/options1/g" pathnames1
sed -i "s/\boutput\b/output1/g" pathnames1
# IOUT= 2 (mr)
cp -r options options2
sed -i '/IOUT=/c\ IOUT= 2,' options2/COMMAND
mkdir output2
cp pathnames pathnames2
sed -i "s/\boptions\b/options2/g" pathnames2
sed -i "s/\boutput\b/output2/g" pathnames2
# IOUT= 3 (conc and mr)
cp -r options options3
sed -i '/IOUT=/c\ IOUT= 3,' options3/COMMAND
mkdir output3
cp pathnames pathnames3
sed -i "s/\boptions\b/options3/g" pathnames3
sed -i "s/\boutput\b/output3/g" pathnames3
#../../src/FLEXPART pathnames3
#IOUT= 4 plume trajectories
# IOUT= 5 (conc + plume trajectories)
# plume trajectories
# input
cp -r options options5
sed -i '/IOUT=/c\ IOUT= 5,' options5/COMMAND
# output
mkdir output5
# paths
cp pathnames pathnames5
sed -i "s/\boptions\b/options5/g" pathnames5
sed -i "s/\boutput\b/output5/g" pathnames5
# launch
#nohup ../../src/FLEXPART pathnames5 &
#nohup ../../src/FLEXPART pathnames2 > nohup.out2 2>&1 &
#nohup ../../src/FLEXPART pathnames3 > nohup.out3 2>&1 &
#nohup ../../src/FLEXPART pathnames5 > nohup.out5 2>&1 &
#B) NetCDF: 9, 10, 11, 12
# IOUT= 9 (conc netCDF)
cp -r options options9
sed -i '/IOUT=/c\ IOUT= 9,' options9/COMMAND
mkdir output9
cp pathnames pathnames9
sed -i "s/\boptions\b/options9/g" pathnames9
sed -i "s/\boutput\b/output9/g" pathnames9
# IOUT= 10 (VMR netCDF)
cp -r options options10
sed -i '/IOUT=/c\ IOUT= 10,' options10/COMMAND
mkdir output10
cp pathnames pathnames10
sed -i "s/\boptions\b/options10/g" pathnames10
sed -i "s/\boutput\b/output10/g" pathnames10
# 11 both in netcdf
cp -r options options11
sed -i '/IOUT=/c\ IOUT= 11,' options11/COMMAND
mkdir output11
cp pathnames pathnames11
sed -i "s/\boptions\b/options11/g" pathnames11
sed -i "s/\boutput\b/output11/g" pathnames11
# 12
cp -r options options12
sed -i '/IOUT=/c\ IOUT= 12,' options12/COMMAND
mkdir output12
cp pathnames pathnames12
sed -i "s/\boptions\b/options12/g" pathnames12
sed -i "s/\boutput\b/output12/g" pathnames12
#nohup ../../src/FLEXPART pathnames9 > nohup.out9 2>&1 &
#ps -e | grep FLEXPART
#FLEXPART=FLEXPART_8d70e43
#nohup $FLEXPART pathnames2 > nohup.out2 2>&1 &
#nohup $FLEXPART pathnames3 > nohup.out3 2>&1 &
#nohup $FLEXPART pathnames5 > nohup.out5 2>&1 &
#nohup $FLEXPART pathnames9 > nohup.out9 2>&1 &
#nohup $FLEXPART pathnames10 > nohup.out10 2>&1 &
#C: backward runs: bwd, bwd5, bwd_nc
#rm -r *_bwd
#C1: bwd -- default (conc)
cp -r options options_bwd
sed -i '/LDIRECT=/c\ LDIRECT= -1,' options_bwd/COMMAND
sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1,' options_bwd/COMMAND
sed -i '/IOUT=/c\ IOUT= 1,' options_bwd/COMMAND #should not be needed
mkdir output_bwd
cp pathnames pathnames_bwd
sed -i "s/\boptions\b/options_bwd/g" pathnames_bwd
sed -i "s/\boutput\b/output_bwd/g" pathnames_bwd
#C2: bwd5 -- bwd cluster
options_new=options_bwd5
cp -r options $options_new
sed -i '/LDIRECT=/c\ LDIRECT= -1,' $options_new/COMMAND
sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1,' $options_new/COMMAND
sed -i '/IOUT=/c\ IOUT= 5,' $options_new/COMMAND
output_new=output_bwd5
mkdir $output_new
pathnames_new=pathnames_bwd5
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#C3: bwd_nc -- bwd netCDF
suffix=_bwd_nc
options_new=options$suffix
cp -r options $options_new
sed -i '/LDIRECT=/c\ LDIRECT= -1,' $options_new/COMMAND
sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1,' $options_new/COMMAND
sed -i '/IOUT=/c\ IOUT= 9,' $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#D: particle output
#nohup $FLEXPART pathnames_bwd > nohup.out_bwd 2>&1 &
#D1: part1: Trajectories from default (conc)
options_new=options_part1
cp -r options $options_new
sed -i '/IPOUT=/c\ IPOUT= 1,' $options_new/COMMAND
output_new=output_part1
mkdir $output_new
pathnames_new=pathnames_part1
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#D2: part2 -- default + partposit in the end
options_new=options_part2
cp -r options $options_new
sed -i '/IPOUT=/c\ IPOUT= 2,' $options_new/COMMAND
output_new=output_part2
mkdir $output_new
pathnames_new=pathnames_part2
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#D3: part_bwd1 -- backward trajectories
options_new=options_part_bwd1
cp -r options $options_new
sed -i '/LDIRECT=/c\ LDIRECT= -1,' $options_new/COMMAND
sed -i '/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1,' $options_new/COMMAND
sed -i '/IPOUT=/c\ IPOUT= 1,' $options_new/COMMAND
output_new=output_part_bwd1
mkdir $output_new
pathnames_new=pathnames_part_bwd1
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#D4: part_QUASILAG: Trajectories MQUASILAG
suffix=part_QUASILAG
options_new=options$suffix
cp -r options $options_new
sed -i '/MQUASILAG=/c\ MQUASILAG= 1,' $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#E: unit indices
## forward
#E1: ind 1 2
suffix=_ind_1_2
options_new=options$suffix
cp -r options $options_new
sed -i '/IND_RECEPTOR=/c\ IND_RECEPTOR= 2,' $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#E2: ind 2 1
suffix=_ind_2_1
#sed_in='"/IND_SOURCE=/c\ IND_SOURCE= 2,"'
options_new=options$suffix
cp -r options $options_new
#sed -i $sed_in $options_new/COMMAND
sed -i "/IND_SOURCE=/c\ IND_SOURCE= 2," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#E3: ind 2 2
suffix=_ind_2_2
sed_in='"/IND_SOURCE=/c\ IND_SOURCE= 2,"'
sed_in2='"/IND_RECEPTOR=/c\ IND_RECEPTOR= 2,"'
options_new=options$suffix
cp -r options $options_new
#sed -i $sed_in $options_new/COMMAND
#sed -i $sed_in2 $options_new/COMMAND
sed -i "/IND_SOURCE=/c\ IND_SOURCE= 2," $options_new/COMMAND
sed -i "/IND_RECEPTOR=/c\ IND_RECEPTOR= 2," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
## backward
#E4: bwd 1 2 --
suffix=_bwd_ind_1_2
options_new=options$suffix
cp -r options $options_new
sed -i "/IND_RECEPTOR=/c\ IND_RECEPTOR= 2," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#E5: bwd 2 1 --
suffix=_bwd_ind_2_1
options_new=options$suffix
cp -r options $options_new
sed -i "/IND_SOURCE=/c\ IND_SOURCE= 2," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#E6: bwd 2 2
suffix=_bwd_ind_2_2
options_new=options$suffix
cp -r options $options_new
sed -i "/IND_SOURCE=/c\ IND_SOURCE= 2," $options_new/COMMAND
sed -i "/IND_RECEPTOR=/c\ IND_RECEPTOR= 2," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#F different species
#F1:
suffix=_specNO
options_new=options$suffix
cp -r options $options_new
sed -i "/SPECNUM_REL=/c\ SPECNUM_REL= 3," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#F2
suffix=_specAERO-TRACE
options_new=options$suffix
cp -r options $options_new
sed -i "/SPECNUM_REL=/c\ SPECNUM_REL= 25," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#F3:
suffix=_specCO
options_new=options$suffix
cp -r options $options_new
sed -i "/SPECNUM_REL=/c\ SPECNUM_REL= 22," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#F4:
suffix=_specBC
options_new=options$suffix
cp -r options $options_new
sed -i "/SPECNUM_REL=/c\ SPECNUM_REL= 40," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#F5:
suffix=_bwd_specNO
options_new=options$suffix
cp -r options $options_new
sed -i "/SPECNUM_REL=/c\ SPECNUM_REL= 3," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#G nested output
#G1
suffix=_nested
options_new=options$suffix
cp -r options $options_new
sed -i "/NESTED_OUTPUT=/c\ NESTED_OUTPUT= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
#G2
suffix=_nested_bwd
options_new=options$suffix
cp -r options $options_new
sed -i "/NESTED_OUTPUT=/c\ NESTED_OUTPUT= 1," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# H MDOMAINFILL
# H1: DOMAINFILL
suffix=_DOMAINFILL
options_new=options$suffix
cp -r options $options_new
sed -i "/MDOMAINFILL=/c\ MDOMAINFILL= 1," $options_new/COMMAND
#sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
#sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# I LINIT_COND + SURF_ONLY
# I1: Gmode
suffix=_Gmode
options_new=options$suffix
cp -r options $options_new
sed -i "/LINIT_COND=/c\ LINIT_COND= 1," $options_new/COMMAND
sed -i "/SURF_ONLY=/c\ SURF_ONLY= 1," $options_new/COMMAND
#sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
#sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# I2: Gmode_bwd
suffix=_Gmode_bwd
options_new=options$suffix
cp -r options $options_new
sed -i "/LINIT_COND=/c\ LINIT_COND= 1," $options_new/COMMAND
sed -i "/SURF_ONLY=/c\ SURF_ONLY= 1," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# J CBLFLAG
# J 1 -- CBLFLAG fwd
suffix=_CBLFLAG
options_new=options$suffix
cp -r options $options_new
sed -i "/CBLFLAG=/c\ CBLFLAG= 1," $options_new/COMMAND
#sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
#sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# J 2 -- CBLFLAG bwd
suffix=_CBLFLAG_bwd
options_new=options$suffix
cp -r options $options_new
sed -i "/CBLFLAG=/c\ CBLFLAG= 1," $options_new/COMMAND
sed -i "/LDIRECT=/c\ LDIRECT= -1," $options_new/COMMAND
sed -i "/IOUTPUTFOREACHRELEASE=/c\ IOUTPUTFOREACHRELEASE= 1," $options_new/COMMAND
output_new=output$suffix
mkdir $output_new
pathnames_new=pathnames$suffix
cp pathnames $pathnames_new
sed -i "s/\boptions\b/$options_new/g" $pathnames_new
sed -i "s/\boutput\b/$output_new/g" $pathnames_new
# H nested input
# need a different pathnames file
# I NCEP winds
#options_new=??? #options_part2
#cp -r options $options_new
#???#sed -i '/IPOUT=/c\ IPOUT= 2,' $options_new/COMMAND
#output_new=???#output_part2
#mkdir $output_new
#pathnames_new=??? pathnames_part2
#cp pathnames $pathnames_new
#sed -i "s/\boptions\b/$options_new/g" $pathnames_new
#sed -i "s/\boutput\b/$output_new/g" $pathnames_new
examples/loop_on_pathnames.sh 0 → 100755
View file @ 4bdca6b8
#!/bin/bash
#OUTPUT="$(ls -1 pathnames*)"
OUTPUTdefault="$(ls -1 pathnames*)"
OUTPUT=${OUTPUTvar:-$OUTPUTdefault}
OUTPUTpwd="$(pwd)"
FLEXPARTdefault=FLEXPART_8d70e43
#FLEXPART=FLEXPART_8d70e43
FLEXPART=${FLEXPARTvar:-$FLEXPARTdefault}
echo $OUTPUT
for i in ${OUTPUT}
do
FP_slurm_batch_sl=slurm_batch_$i.sl
#FP_slurm_batch_sl=toto.sl
echo '#!/bin/bash' > $FP_slurm_batch_sl
echo '#SBATCH -J ' FP_$i >> $FP_slurm_batch_sl
echo '#SBATCH -D ' ${OUTPUTpwd} ' # working directory of script' >> $FP_slurm_batch_sl
echo '#SBATCH --mem=8092 # total memory requirement for the node (in MB)' >> $FP_slurm_batch_sl
echo '#SBATCH --mem-per-cpu=1024 # minimum amount of memory required pr. allocated CPU' >> $FP_slurm_batch_sl
echo '#SBATCH -n 1 # number of tasks, e.g. number of cores' >> $FP_slurm_batch_sl
echo '#SBATCH -N 1 # ensure all cores are on the same host/machine' >> $FP_slurm_batch_sl
echo '#SBATCH --mail-type=ALL # when to send e-mail (valid options are: BEGIN,END,FAIL,REQUEUE,ALL)' >> $FP_slurm_batch_sl
echo '#SBATCH --mail-user=ip@nilu.no # who to send email to' >> $FP_slurm_batch_sl
echo '#SBATCH -o output-%N-%j.out # filename to send standard out to' >> $FP_slurm_batch_sl
echo '#SBATCH -e error-%N-%j.err # filename to send standard error to' >> $FP_slurm_batch_sl
echo ' ' >> $FP_slurm_batch_sl
echo 'srun -l ' $FLEXPART $i >> $FP_slurm_batch_sl
echo $FLEXPART $i
done
examples/read_joblist.sh 0 → 100755
View file @ 4bdca6b8
#!/bin/bash
joblist=joblist #0
#declare -a myarray
declare -a myarray0
declare -a myarray1
declare -a myarray2
# Load file into array.
let i=0
let i0=0
let i1=0
let i1=0
while IFS=$'\n' read -r line_data; do
# Parse “${line_data}” to produce content
# that will be stored in the array.
# (Assume content is stored in a variable
# named 'array_element'.)
# ...
#sbatch slurm_batch_pathnames10.sl
#Submitted batch job 113835
# if [ $((i%2)) -eq 0 ]
# then
## echo $i is "even"
# echo line_data=$line_data
# array_element0=${i#*pathnames}
# echo array_element0=$array_element0
# myarray0[i]="${array_element0}"
# ((++i0))
# fi
echo line_data read=$line_data
#array_element1=${line_data#*pathnames}
array_element1=${line_data#*pathnames}
echo array_element1=$array_element1
array_element1=${array_element1%*.sl}
echo array_element1=$array_element1
myarray1[i]="${array_element1}" # Populate array.
# myarray[i]="${line_data}"
((++i))
done < ${joblist}1$joblistgroup
#done < ${joblist}1
let i=0
while IFS=$'\n' read -r line_data; do
echo line_data read=$line_data
array_element2bis=${line_data##job}
array_element2=${line_data:20:26}
echo array_element2bis=$array_element2
echo array_element2=$array_element2
myarray2[i]="${array_element2}" # Populate array.
((++i))
done < ${joblist}2$joblistgroup
#done < ${joblist}2
let i=0
while (( ${#myarray1[@]} > i )); do
printf "${myarray1[i++]}\n"
done
let i=0
while (( ${#myarray2[@]} > i )); do
printf "${myarray2[i++]}\n"
done
let i=0
while (( ${#myarray2[@]} > i )); do
echo 'test' "${myarray1[$i]}" 'is job' "${myarray2[$i]}"
((++i))
done
let i=0
while (( ${#myarray2[@]} > i )); do
echo 'test' "${myarray1[$i]}" 'is job' "${myarray2[$i]}"
((++i))
done
#exit
tot_successes="$(cat output-*.out | grep CONGRATULATIONS | wc -l)"
tot_runs="$(ls -1 output-*.out | wc -l)"
echo $tot_successes successful out of $tot_runs
let isuc=0
let ifail=0
let i=0
while (( ${#myarray2[@]} > i )); do
# stringin < output-*myarray1[$i].out